Genome Meta Information: Staphylococcus cohnii FDAARGOS_538 (GCA_003956025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003956025.1 | ||
| HOMD Taxon-ID | HMT-0117 | ||
| Species Name (in use by HOMD) | Staphylococcus cohnii | ||
| Organism Name (as deposited) | HMT-117 Staphylococcus cohnii FDAARGOS_538 | ||
| Strain or Isolate | FDAARGOS_538 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus cohnii |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 1927.35 | ||
| Contigs |
|
||
| Total Sequence Length | 2,700,845 (bp) | ||
| GC Percentage | 32.38 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/956/025/GCA_003956025.1_ASM395602v1 | ||
| CDS | 2638 | ||
| Genes | 2769 | ||
| mRNA | 2769 | ||
| misc RNA | 51 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.47 % | ||
| CheckM Contamination | 0.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM395602v1 |
| GenBank Assembly Accession | GCA_003956025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003956025.1 [NCBI] |
| BioSample | SAMN10163250 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2018-10-02T12:23:11.080 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29382 |
| Isolation Source | clinical isolate |
| Geo Location | not applicable |
