Genome Meta Information: Afipia broomeae AWTP1-7 (GCA_003963205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003963205.1 | ||
| HOMD Taxon-ID | HMT-0559 | ||
| Species Name (in use by HOMD) | Afipia broomeae | ||
| Organism Name (as deposited) | HMT-559 Afipia broomeae AWTP1-7 | ||
| Strain or Isolate | AWTP1-7 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia; s__Afipia broomeae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 16.79 | ||
| Contigs |
|
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| Total Sequence Length | 5,173,336 (bp) | ||
| GC Percentage | 61.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/963/205/GCA_003963205.1_ASM396320v1 | ||
| CDS | 4960 | ||
| Genes | 5045 | ||
| mRNA | 5045 | ||
| misc RNA | 33 | ||
| rRNA | 1 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM396320v1 |
| GenBank Assembly Accession | GCA_003963205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN10409047 [NCBI] |
| BioProject | PRJNA490743 [NCBI] |
| Submitter | University of California, Berkeley |
| Submission Date | 2018-11-10T23:45:06.173 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | RXJE01 |
| NCBI TaxID | 2072420 |
| Isolation Source | Granular activated carbon |
| Geo Location | USA: Texas |
