Genome Meta Information: Staphylococcus caprae JMUB145 (GCA_003966585.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003966585.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae JMUB145 | ||
| Strain or Isolate | JMUB145 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | MiSeq;ABI 3730 | ||
| Genome Coverage | 112.46 | ||
| Contigs |
|
||
| Total Sequence Length | 2,618,380 (bp) | ||
| GC Percentage | 33.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/585/GCA_003966585.1_ASM396658v1 | ||
| CDS | 2447 | ||
| Genes | 2601 | ||
| mRNA | 2601 | ||
| misc RNA | 74 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.67 % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 0.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM396658v1 |
| GenBank Assembly Accession | GCA_003966585.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003966585.1 [NCBI] |
| BioSample | SAMD00115877 [NCBI] |
| BioProject | PRJDB6943 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2018-09-01T01:00:46.317 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29380 |
| Isolation Source | |
| Geo Location | Japan |
