Genome Meta Information: Staphylococcus caprae JMUB590 (GCA_003966605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003966605.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae JMUB590 | ||
| Strain or Isolate | JMUB590 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | MiSeq;ABI 3730 | ||
| Genome Coverage | 179.3 | ||
| Contigs |
|
||
| Total Sequence Length | 2,629,173 (bp) | ||
| GC Percentage | 33.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/605/GCA_003966605.1_ASM396660v1 | ||
| CDS | 2466 | ||
| Genes | 2609 | ||
| mRNA | 2609 | ||
| misc RNA | 66 | ||
| rRNA | 16 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.68 % | ||
| CheckM Completeness | 99.81 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM396660v1 |
| GenBank Assembly Accession | GCA_003966605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003966605.1 [NCBI] |
| BioSample | SAMD00115876 [NCBI] |
| BioProject | PRJDB6943 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2018-09-01T01:00:46.297 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29380 |
| Isolation Source | |
| Geo Location | Japan |
