Genome Meta Information: Lactobacillus crispatus AB70 (GCA_003971565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003971565.1 | ||
| HOMD Taxon-ID | HMT-0817 | ||
| Species Name (in use by HOMD) | Lactobacillus crispatus | ||
| Organism Name (as deposited) | HMT-817 Lactobacillus crispatus AB70 | ||
| Strain or Isolate | AB70 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus crispatus |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 406.6 | ||
| Contigs |
|
||
| Total Sequence Length | 2,367,925 (bp) | ||
| GC Percentage | 37.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/971/565/GCA_003971565.1_ASM397156v1 | ||
| CDS | 2383 | ||
| Genes | 2521 | ||
| mRNA | 2521 | ||
| misc RNA | 51 | ||
| rRNA | 15 | ||
| tRNA | 71 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.7 % | ||
| CheckM Completeness | 95.47 % | ||
| CheckM Contamination | 0.93 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM397156v1 |
| GenBank Assembly Accession | GCA_003971565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003971565.1 [NCBI] |
| BioSample | SAMN08409124 [NCBI] |
| BioProject | PRJNA431864 [NCBI] |
| Submitter | KRIBB |
| Submission Date | 2018-01-27T20:17:02.870 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 47770 |
| Isolation Source | Korean vaginal fluid |
| Geo Location | South Korea |
