Genome Meta Information: Rothia aeria HSID18067 (GCA_003989445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003989445.1 | ||
| HOMD Taxon-ID | HMT-0188 | ||
| Species Name (in use by HOMD) | Rothia aeria | ||
| Organism Name (as deposited) | HMT-188 Rothia aeria HSID18067 | ||
| Strain or Isolate | HSID18067 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia aeria |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 451.03 | ||
| Contigs |
|
||
| Total Sequence Length | 2,641,641 (bp) | ||
| GC Percentage | 56.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/445/GCA_003989445.1_ASM398944v1 | ||
| CDS | 2310 | ||
| Genes | 2378 | ||
| mRNA | 2378 | ||
| misc RNA | 14 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.14 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM398944v1 |
| GenBank Assembly Accession | GCA_003989445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003989445.1 [NCBI] |
| BioSample | SAMN10118516 [NCBI] |
| BioProject | PRJNA492917 [NCBI] |
| Submitter | University of Wisconsin-Madison |
| Submission Date | 2018-09-24T17:25:03.880 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RBMF01 |
| NCBI TaxID | 2419514 |
| Isolation Source | nasal lavage |
| Geo Location | USA:Wisconsin |
