Genome Meta Information: Haemophilus parainfluenzae LC_1315_18 (GCA_004104465.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004104465.2 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae LC_1315_18 | ||
| Strain or Isolate | LC_1315_18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp030405845 |
||
| Sequencing Technology | Oxford Nanopore MiniION | ||
| Genome Coverage | 40 | ||
| Contigs |
|
||
| Total Sequence Length | 2,067,650 (bp) | ||
| GC Percentage | 39.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/104/465/GCA_004104465.2_ASM410446v2 | ||
| CDS | 1973 | ||
| Genes | 2080 | ||
| mRNA | 2080 | ||
| misc RNA | 29 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.6 % | ||
| CheckM Completeness | 98.47 % | ||
| CheckM Contamination | 1.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM410446v2 |
| GenBank Assembly Accession | GCA_004104465.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004104465.2 [NCBI] |
| BioSample | SAMN10774168 [NCBI] |
| BioProject | PRJNA515889 [NCBI] |
| Submitter | University of Bern |
| Submission Date | 2019-01-18T11:44:05.740 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 729 |
| Isolation Source | Urethral swab |
| Geo Location | Italy: Lecco |
