Taxon Table | Genome Table
Genome Meta Information:
Porphyromonas
gingivalis
H3 (GCA_004214925.1)
| HOMD Genome-ID |
GCA_004214925.1
|
| HOMD Taxon-ID |
HMT-0619
|
| Species Name (in use by HOMD) |
Porphyromonas gingivalis
|
| Organism Name (as deposited) |
HMT-619 Porphyromonas gingivalis H3
|
| Strain or Isolate |
H3
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;
s__Porphyromonas gingivalis |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
28
|
| Contigs |
Number of Contigs: 165
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,311,066 (bp) |
| GC Percentage |
48.35
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/214/925/GCA_004214925.1_ASM421492v1
|
| CDS |
1951
|
| Genes |
2014
|
| mRNA |
2014
|
| misc RNA |
14
|
| rRNA |
3
|
| tRNA |
45
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.54 %
|
| CheckM Completeness |
98.71 %
|
| CheckM Contamination |
0.58 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM421492v1
|
| GenBank Assembly Accession |
GCA_004214925.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_004214925.1
[NCBI]
|
| BioSample |
SAMN10882880
[NCBI]
|
| BioProject |
PRJNA521311
[NCBI]
|
| Submitter |
Castro Lab
|
| Submission Date |
2019-02-07T07:41:06.300
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
SGAZ01
|
| NCBI TaxID |
837
|
| Isolation Source |
subgingival plate
|
| Geo Location |
Chile: Santiago
|
