Genome Meta Information: Porphyromonas gingivalis CP3 (GCA_004214945.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004214945.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis CP3 | ||
| Strain or Isolate | CP3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 300 | ||
| Contigs |
|
||
| Total Sequence Length | 2,251,246 (bp) | ||
| GC Percentage | 48.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/214/945/GCA_004214945.1_ASM421494v1 | ||
| CDS | 1893 | ||
| Genes | 1954 | ||
| mRNA | 1954 | ||
| misc RNA | 10 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.46 % | ||
| CheckM Completeness | 98.1 % | ||
| CheckM Contamination | 0.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM421494v1 |
| GenBank Assembly Accession | GCA_004214945.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004214945.1 [NCBI] |
| BioSample | SAMN10882879 [NCBI] |
| BioProject | PRJNA521311 [NCBI] |
| Submitter | Castro Lab |
| Submission Date | 2019-02-07T07:41:06.276 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SGBA01 |
| NCBI TaxID | 837 |
| Isolation Source | subgingival plate |
| Geo Location | Chile: Santiago |
