Genome Meta Information: Gardnerella vaginalis ATCC 14018 (GCA_004336685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004336685.1 | ||
| HOMD Taxon-ID | HMT-0829 | ||
| Species Name (in use by HOMD) | Gardnerella vaginalis | ||
| Organism Name (as deposited) | HMT-829 Gardnerella vaginalis ATCC 14018 | ||
| Strain or Isolate | ATCC 14018 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium vaginale |
||
| Sequencing Technology | IonTorrent | ||
| Genome Coverage | 204.72 | ||
| Contigs |
|
||
| Total Sequence Length | 1,657,111 (bp) | ||
| GC Percentage | 41.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/336/685/GCA_004336685.1_ASM433668v1 | ||
| CDS | 1269 | ||
| Genes | 1333 | ||
| mRNA | 1333 | ||
| misc RNA | 15 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 98.56 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM433668v1 |
| GenBank Assembly Accession | GCA_004336685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004336685.1 [NCBI] |
| BioSample | SAMN11037755 [NCBI] |
| BioProject | PRJNA524873 [NCBI] |
| Submitter | Kingston University |
| Submission Date | 2019-02-28T12:32:03.750 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SJWZ01 |
| NCBI TaxID | 585528 |
| Isolation Source | patient |
| Geo Location | NA |
