Genome Meta Information: Sphingomonas glacialis AAP5 (GCA_004354345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004354345.1 | ||
| HOMD Taxon-ID | HMT-0003 | ||
| Species Name (in use by HOMD) | Sphingomonas glacialis | ||
| Organism Name (as deposited) | HMT-003 Sphingomonas glacialis AAP5 | ||
| Strain or Isolate | AAP5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas; s__Sphingomonas glacialis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 178.67 | ||
| Contigs |
|
||
| Total Sequence Length | 4,382,271 (bp) | ||
| GC Percentage | 65.87 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/345/GCA_004354345.1_ASM435434v1 | ||
| CDS | 4065 | ||
| Genes | 4160 | ||
| mRNA | 4160 | ||
| misc RNA | 30 | ||
| rRNA | 9 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.99 % | ||
| CheckM Contamination | 1.79 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM435434v1 |
| GenBank Assembly Accession | GCA_004354345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004354345.1 [NCBI] |
| BioSample | SAMN11104988 [NCBI] |
| BioProject | PRJNA526624 [NCBI] |
| Submitter | Institute of Microbiology, CAS |
| Submission Date | 2019-03-12T07:49:04.823 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1523415 |
| Isolation Source | water column of an alpine lake |
| Geo Location | Austria: lake Gossenkoellesee, |
