Genome Meta Information: Lacticaseibacillus paracasei ATCC 25302 (GCA_004354655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004354655.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei ATCC 25302 | ||
| Strain or Isolate | ATCC 25302 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 3,003,415 (bp) | ||
| GC Percentage | 46.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/354/655/GCA_004354655.1_ASM435465v1 | ||
| CDS | 2922 | ||
| Genes | 3022 | ||
| mRNA | 3022 | ||
| misc RNA | 32 | ||
| rRNA | 9 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.71 % | ||
| CheckM Contamination | 2.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM435465v1 |
| GenBank Assembly Accession | GCA_004354655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004354655.1 [NCBI] |
| BioSample | SAMN08555498 [NCBI] |
| BioProject | PRJNA434388 [NCBI] |
| Submitter | Carlsberg Research Laboratory |
| Submission Date | 2018-02-16T08:36:02.503 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PUFK01 |
| NCBI TaxID | 47714 |
| Isolation Source | missing |
| Geo Location | Denmark |
