Genome Meta Information: Haemophilus haemolyticus 16-549009 (GCA_004362455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004362455.1 | ||
| HOMD Taxon-ID | HMT-0851 | ||
| Species Name (in use by HOMD) | Haemophilus haemolyticus | ||
| Organism Name (as deposited) | HMT-851 Haemophilus haemolyticus 16-549009 | ||
| Strain or Isolate | 16-549009 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus haemolyticus |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 437 | ||
| Contigs |
|
||
| Total Sequence Length | 1,843,335 (bp) | ||
| GC Percentage | 38.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/362/455/GCA_004362455.1_ASM436245v1 | ||
| CDS | 1753 | ||
| Genes | 1836 | ||
| mRNA | 1836 | ||
| misc RNA | 31 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.94 % | ||
| CheckM Completeness | 95.17 % | ||
| CheckM Contamination | 0.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM436245v1 |
| GenBank Assembly Accession | GCA_004362455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004362455.1 [NCBI] |
| BioSample | SAMN10405313 [NCBI] |
| BioProject | PRJNA504773 [NCBI] |
| Submitter | UMC Utrecht |
| Submission Date | 2018-11-09T09:43:04.647 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | RWKG01 |
| NCBI TaxID | 726 |
| Isolation Source | sputum |
| Geo Location | United Kingdom: Belfast, North |
