Genome Meta Information: Actinomyces viscosus CCUG 14476 (GCA_004525795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004525795.1 | ||
| HOMD Taxon-ID | HMT-0688 | ||
| Species Name (in use by HOMD) | Actinomyces viscosus | ||
| Organism Name (as deposited) | HMT-688 Actinomyces viscosus CCUG 14476 | ||
| Strain or Isolate | CCUG 14476 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces viscosus |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 814 | ||
| Contigs |
|
||
| Total Sequence Length | 3,336,376 (bp) | ||
| GC Percentage | 69.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/525/795/GCA_004525795.1_ASM452579v1 | ||
| CDS | 2758 | ||
| Genes | 2829 | ||
| mRNA | 2829 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM452579v1 |
| GenBank Assembly Accession | GCA_004525795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004525795.1 [NCBI] |
| BioSample | SAMN11246704 [NCBI] |
| BioProject | PRJNA305687 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-03-25T07:01:04.116 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SPDW01 |
| NCBI TaxID | 1656 |
| Isolation Source | periodontal disease in hamsters |
| Geo Location | USA |
