Genome Meta Information: Rothia dentocariosa 1C11 (GCA_004563855.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004563855.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa 1C11 | ||
| Strain or Isolate | 1C11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 210.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,536,666 (bp) | ||
| GC Percentage | 53.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/563/855/GCA_004563855.1_ASM456385v1 | ||
| CDS | 2224 | ||
| Genes | 2296 | ||
| mRNA | 2296 | ||
| misc RNA | 12 | ||
| rRNA | 7 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.75 % | ||
| CheckM Completeness | 94.16 % | ||
| CheckM Contamination | 5.75 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM456385v1 |
| GenBank Assembly Accession | GCA_004563855.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004563855.1 [NCBI] |
| BioSample | SAMN11249661 [NCBI] |
| BioProject | PRJNA480027 [NCBI] |
| Submitter | University of New Hampshire |
| Submission Date | 2019-03-25T10:43:04.360 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SPNF01 |
| NCBI TaxID | 2047 |
| Isolation Source | root nodule |
| Geo Location | USA: Durham, NH, Adams Point |
