Genome Meta Information: Kocuria rhizophila 4R-31 (GCA_004563945.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004563945.1 | ||
| HOMD Taxon-ID | HMT-0197 | ||
| Species Name (in use by HOMD) | Kocuria rhizophila | ||
| Organism Name (as deposited) | HMT-197 Kocuria rhizophila 4R-31 | ||
| Strain or Isolate | 4R-31 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria; s__Kocuria rhizophila |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 571.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,659,245 (bp) | ||
| GC Percentage | 70.7 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/563/945/GCA_004563945.1_ASM456394v1 | ||
| CDS | 2281 | ||
| Genes | 2355 | ||
| mRNA | 2355 | ||
| misc RNA | 16 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.93 % | ||
| CheckM Completeness | 99.62 % | ||
| CheckM Contamination | 2.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM456394v1 |
| GenBank Assembly Accession | GCA_004563945.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004563945.1 [NCBI] |
| BioSample | SAMN11249666 [NCBI] |
| BioProject | PRJNA480027 [NCBI] |
| Submitter | University of New Hampshire |
| Submission Date | 2019-03-25T10:43:04.453 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SPNK01 |
| NCBI TaxID | 72000 |
| Isolation Source | root nodule |
| Geo Location | USA: Durham, NH, Adams Point |
