Genome Meta Information: Neisseria subflava ATCC 49275 (GCA_005221305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005221305.1 | ||
| HOMD Taxon-ID | HMT-0476 | ||
| Species Name (in use by HOMD) | Neisseria subflava | ||
| Organism Name (as deposited) | HMT-476 Neisseria subflava ATCC 49275 | ||
| Strain or Isolate | ATCC 49275 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria subflava |
||
| Sequencing Technology | Illumina MiSeq and Oxford Nanopore | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 2,195,659 (bp) | ||
| GC Percentage | 49.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/305/GCA_005221305.1_ASM522130v1 | ||
| CDS | 2046 | ||
| Genes | 2152 | ||
| mRNA | 2152 | ||
| misc RNA | 35 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.5 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM522130v1 |
| GenBank Assembly Accession | GCA_005221305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005221305.1 [NCBI] |
| BioSample | SAMN11461056 [NCBI] |
| BioProject | PRJNA533546 [NCBI] |
| Submitter | Kings College London |
| Submission Date | 2019-04-18T09:22:03.180 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28449 |
| Isolation Source | not applicable |
| Geo Location | not applicable |
