Genome Meta Information: Actinomyces oris F0337 (GCA_005696555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005696555.1 | ||
| HOMD Taxon-ID | HMT-0171 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-171 Actinomyces oris clade-171 F0337 | ||
| Strain or Isolate | F0337 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris_E |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 225 | ||
| Contigs |
|
||
| Total Sequence Length | 3,097,489 (bp) | ||
| GC Percentage | 68.13 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/555/GCA_005696555.1_ASM569655v1 | ||
| CDS | 2566 | ||
| Genes | 2640 | ||
| mRNA | 2640 | ||
| misc RNA | 12 | ||
| rRNA | 9 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.84 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM569655v1 |
| GenBank Assembly Accession | GCA_005696555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005696555.1 [NCBI] |
| BioSample | SAMN11483330 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2019-04-23T14:32:06.066 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 706439 |
| Isolation Source | human oral cavity D057 |
| Geo Location | USA: Blacksberg, Virginia |
