Genome Meta Information: Schaalia odontolytica XH001 (GCA_005696695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005696695.1 | ||
| HOMD Taxon-ID | HMT-0701 | ||
| Species Name (in use by HOMD) | Schaalia odontolytica | ||
| Organism Name (as deposited) | HMT-701 Schaalia odontolytica XH001 | ||
| Strain or Isolate | XH001 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia odontolytica_C |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 371 | ||
| Contigs |
|
||
| Total Sequence Length | 2,360,133 (bp) | ||
| GC Percentage | 65.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/696/695/GCA_005696695.1_ASM569669v1 | ||
| CDS | 1994 | ||
| Genes | 2062 | ||
| mRNA | 2062 | ||
| misc RNA | 9 | ||
| rRNA | 9 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.49 % | ||
| CheckM Completeness | 94.09 % | ||
| CheckM Contamination | 2.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM569669v1 |
| GenBank Assembly Accession | GCA_005696695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005696695.1 [NCBI] |
| BioSample | SAMN11483329 [NCBI] |
| BioProject | PRJNA241438 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2019-04-23T14:32:06.046 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1660 |
| Isolation Source | human oral cavity UCLA1 |
| Geo Location | USA: Los Angeles, California |
