Genome Meta Information: Lentilactobacillus parafarraginis FAM 1079 (GCA_005864225.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005864225.1 | ||
| HOMD Taxon-ID | HMT-0418 | ||
| Species Name (in use by HOMD) | Lentilactobacillus parafarraginis | ||
| Organism Name (as deposited) | HMT-418 Lentilactobacillus parafarraginis FAM 1079 | ||
| Strain or Isolate | FAM 1079 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus; s__Lentilactobacillus parafarraginis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 2,963,205 (bp) | ||
| GC Percentage | 45.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/864/225/GCA_005864225.1_ASM586422v1 | ||
| CDS | 2810 | ||
| Genes | 2927 | ||
| mRNA | 2927 | ||
| misc RNA | 50 | ||
| rRNA | 7 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.77 % | ||
| CheckM Completeness | 98.96 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM586422v1 |
| GenBank Assembly Accession | GCA_005864225.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005864225.1 [NCBI] |
| BioSample | SAMN11653943 [NCBI] |
| BioProject | PRJNA543085 [NCBI] |
| Submitter | Agroscope |
| Submission Date | 2019-05-15T11:59:04.896 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VBSX01 |
| NCBI TaxID | 390842 |
| Isolation Source | missing |
| Geo Location | Switzerland |
