Taxon Table | Genome Table
Genome Meta Information:
Haemophilus
aegyptius
F3042 (GCA_005888215.1)
| HOMD Genome-ID |
GCA_005888215.1
|
| HOMD Taxon-ID |
HMT-0535
|
| Species Name (in use by HOMD) |
Haemophilus aegyptius
|
| Organism Name (as deposited) |
HMT-535 Haemophilus aegyptius F3042
|
| Strain or Isolate |
F3042
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus;
s__Haemophilus influenzae |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
200
|
| Contigs |
Number of Contigs: 137
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,969,657 (bp) |
| GC Percentage |
38.04
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/215/GCA_005888215.1_ASM588821v1
|
| CDS |
1955
|
| Genes |
2050
|
| mRNA |
2050
|
| misc RNA |
41
|
| rRNA |
4
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.95 %
|
| CheckM Completeness |
98.66 %
|
| CheckM Contamination |
2.21 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM588821v1
|
| GenBank Assembly Accession |
GCA_005888215.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_005888215.1
[NCBI]
|
| BioSample |
SAMN04115934
[NCBI]
|
| BioProject |
PRJNA297159
[NCBI]
|
| Submitter |
Institute of Biology - University of Campinas
|
| Submission Date |
2015-09-28T09:30:10.380
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
LNKO01
|
| NCBI TaxID |
725
|
| Isolation Source |
Oropharynx from a Brazilian Purpuric Fever case
|
| Geo Location |
Brazil: Sao Paulo, Serrana
|
