Genome Meta Information: Sphingomonas glacialis E6.1 (GCA_006439055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006439055.1 | ||
| HOMD Taxon-ID | HMT-0003 | ||
| Species Name (in use by HOMD) | Sphingomonas glacialis | ||
| Organism Name (as deposited) | HMT-003 Sphingomonas glacialis E6.1 | ||
| Strain or Isolate | E6.1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas; s__Sphingomonas glacialis_A |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 87 | ||
| Contigs |
|
||
| Total Sequence Length | 5,126,166 (bp) | ||
| GC Percentage | 65.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/439/055/GCA_006439055.1_ASM643905v1 | ||
| CDS | 4637 | ||
| Genes | 4745 | ||
| mRNA | 4745 | ||
| misc RNA | 40 | ||
| rRNA | 5 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 90.17 % | ||
| CheckM Completeness | 98.36 % | ||
| CheckM Contamination | 3.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM643905v1 |
| GenBank Assembly Accession | GCA_006439055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006439055.1 [NCBI] |
| BioSample | SAMN10244989 [NCBI] |
| BioProject | PRJNA496474 [NCBI] |
| Submitter | Universite Laval |
| Submission Date | 2018-10-15T15:35:15.636 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RCZC01 |
| NCBI TaxID | 658225 |
| Isolation Source | Ice-wedge polygon |
| Geo Location | Canada: Axel Heiberg Island |
