Genome Meta Information: Staphylococcus capitis TCR-3 (GCA_006540355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006540355.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis TCR-3 | ||
| Strain or Isolate | TCR-3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | IonTorrent | ||
| Genome Coverage | 160 | ||
| Contigs |
|
||
| Total Sequence Length | 2,511,037 (bp) | ||
| GC Percentage | 32.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/540/355/GCA_006540355.1_ASM654035v1 | ||
| CDS | 2410 | ||
| Genes | 2492 | ||
| mRNA | 2492 | ||
| misc RNA | 53 | ||
| rRNA | 2 | ||
| tRNA | 26 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.85 % | ||
| CheckM Completeness | 97.39 % | ||
| CheckM Contamination | 0.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM654035v1 |
| GenBank Assembly Accession | GCA_006540355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006540355.1 [NCBI] |
| BioSample | SAMN10373493 [NCBI] |
| BioProject | PRJNA503754 [NCBI] |
| Submitter | Teikyo University Institute of Medical Mycology |
| Submission Date | 2018-11-04T21:40:07.203 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RIYT01 |
| NCBI TaxID | 29388 |
| Isolation Source | Laboratory environment |
| Geo Location | Japan: Tokyo |
