Genome Meta Information: Alistipes onderdonkii 3BBH6 (GCA_006542645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006542645.1 | ||
| HOMD Taxon-ID | HMT-0964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii 3BBH6 | ||
| Strain or Isolate | 3BBH6 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina MiSeq; PacBio Sequel | ||
| Genome Coverage | 550 | ||
| Contigs |
|
||
| Total Sequence Length | 3,507,492 (bp) | ||
| GC Percentage | 58.0 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/542/645/GCA_006542645.1_Aond_1.0 | ||
| CDS | 2927 | ||
| Genes | 2996 | ||
| mRNA | 2996 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.89 % | ||
| CheckM Completeness | 98.26 % | ||
| CheckM Contamination | 1.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Aond_1.0 |
| GenBank Assembly Accession | GCA_006542645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006542645.1 [NCBI] |
| BioSample | SAMD00166230 [NCBI] |
| BioProject | PRJDB8150 [NCBI] |
| Submitter | Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN |
| Submission Date | 2019-04-03T01:00:43.300 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2585117 |
| Isolation Source | |
| Geo Location | Japan |
