Genome Meta Information: Staphylococcus caprae 26D (GCA_007814385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007814385.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae 26D | ||
| Strain or Isolate | 26D | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 427 | ||
| Contigs |
|
||
| Total Sequence Length | 2,691,499 (bp) | ||
| GC Percentage | 33.62 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/814/385/GCA_007814385.1_ASM781438v1 | ||
| CDS | 2563 | ||
| Genes | 2710 | ||
| mRNA | 2710 | ||
| misc RNA | 67 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.67 % | ||
| CheckM Completeness | 99.73 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM781438v1 |
| GenBank Assembly Accession | GCA_007814385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007814385.1 [NCBI] |
| BioSample | SAMN09714418 [NCBI] |
| BioProject | PRJNA482667 [NCBI] |
| Submitter | Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal |
| Submission Date | 2018-07-25T09:43:05.873 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29380 |
| Isolation Source | Buffalo milk |
| Geo Location | Brazil |
