Genome Meta Information: Treponema putidum ATCC 700334 (GCA_007830595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007830595.1 | ||
| HOMD Taxon-ID | HMT-0743 | ||
| Species Name (in use by HOMD) | Treponema putidum | ||
| Organism Name (as deposited) | HMT-743 Treponema putidum ATCC 700334 | ||
| Strain or Isolate | ATCC 700334 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_B; s__Treponema_B putidum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 425 | ||
| Contigs |
|
||
| Total Sequence Length | 2,772,337 (bp) | ||
| GC Percentage | 37.28 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/830/595/GCA_007830595.1_ASM783059v1 | ||
| CDS | 2510 | ||
| Genes | 2572 | ||
| mRNA | 2572 | ||
| misc RNA | 14 | ||
| rRNA | 4 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.97 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM783059v1 |
| GenBank Assembly Accession | GCA_007830595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007830595.1 [NCBI] |
| BioSample | SAMN02983005 [NCBI] |
| BioProject | PRJNA257861 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2014-08-11T20:16:12.036 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VLLD01 |
| NCBI TaxID | 221027 |
| Isolation Source | |
| Geo Location | USA |
