Genome Meta Information: Lacticaseibacillus paracasei NBRC 15889 (GCA_007989125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007989125.1 | ||
| HOMD Taxon-ID | HMT-0716 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus paracasei | ||
| Organism Name (as deposited) | HMT-716 Lacticaseibacillus paracasei NBRC 15889 | ||
| Strain or Isolate | NBRC 15889 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus paracasei |
||
| Sequencing Technology | Illumina HiSeq 1000 | ||
| Genome Coverage | 85 | ||
| Contigs |
|
||
| Total Sequence Length | 2,872,191 (bp) | ||
| GC Percentage | 46.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/989/125/GCA_007989125.1_ASM798912v1 | ||
| CDS | 2766 | ||
| Genes | 2851 | ||
| mRNA | 2851 | ||
| misc RNA | 32 | ||
| rRNA | 2 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.56 % | ||
| CheckM Contamination | 0.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM798912v1 |
| GenBank Assembly Accession | GCA_007989125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007989125.1 [NCBI] |
| BioSample | SAMD00166241 [NCBI] |
| BioProject | PRJDB6070 [NCBI] |
| Submitter | National Institute of Technology and Evaluation |
| Submission Date | 2019-04-04T01:00:42.436 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | BJVL01 |
| NCBI TaxID | 47714 |
| Isolation Source | |
| Geo Location | missing |
