Genome Meta Information: Leptotrichia sp. HMT-417 JMUB3936 (GCA_007990445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007990445.1 | ||
| HOMD Taxon-ID | HMT-0417 | ||
| Species Name (in use by HOMD) | Leptotrichia sp. HMT-417 | ||
| Organism Name (as deposited) | HMT-417 Leptotrichia sp. HMT-417 JMUB3936 | ||
| Strain or Isolate | JMUB3936 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia wadei_A |
||
| Sequencing Technology | MinION; MiSeq | ||
| Genome Coverage | 54 | ||
| Contigs |
|
||
| Total Sequence Length | 2,404,956 (bp) | ||
| GC Percentage | 30.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/445/GCA_007990445.1_ASM799044v1 | ||
| CDS | 2285 | ||
| Genes | 2378 | ||
| mRNA | 2378 | ||
| misc RNA | 32 | ||
| rRNA | 15 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.62 % | ||
| CheckM Completeness | 97.97 % | ||
| CheckM Contamination | 1.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM799044v1 |
| GenBank Assembly Accession | GCA_007990445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007990445.1 [NCBI] |
| BioSample | SAMD00156221 [NCBI] |
| BioProject | PRJDB7856 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2018-12-27T01:00:55.463 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 157687 |
| Isolation Source | |
| Geo Location | Japan |
