Genome Meta Information: Leptotrichia hofstadii JCM16775 (GCA_007990525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007990525.1 | ||
| HOMD Taxon-ID | HMT-0224 | ||
| Species Name (in use by HOMD) | Leptotrichia hofstadii | ||
| Organism Name (as deposited) | HMT-224 Leptotrichia hofstadii JCM16775 | ||
| Strain or Isolate | JCM16775 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia hofstadii |
||
| Sequencing Technology | MinION; MiSeq | ||
| Genome Coverage | 47 | ||
| Contigs |
|
||
| Total Sequence Length | 2,604,381 (bp) | ||
| GC Percentage | 30.61 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/525/GCA_007990525.1_ASM799052v1 | ||
| CDS | 2462 | ||
| Genes | 2547 | ||
| mRNA | 2547 | ||
| misc RNA | 22 | ||
| rRNA | 15 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.4 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM799052v1 |
| GenBank Assembly Accession | GCA_007990525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007990525.1 [NCBI] |
| BioSample | SAMD00156223 [NCBI] |
| BioProject | PRJDB7856 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2018-12-27T01:00:55.500 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 157688 |
| Isolation Source | |
| Geo Location | Norway |
