Genome Meta Information: Leptotrichia hongkongensis JMUB5056 (GCA_007990635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007990635.1 | ||
| HOMD Taxon-ID | HMT-0213 | ||
| Species Name (in use by HOMD) | Leptotrichia hongkongensis | ||
| Organism Name (as deposited) | HMT-213 Leptotrichia hongkongensis JMUB5056 | ||
| Strain or Isolate | JMUB5056 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia hongkongensis |
||
| Sequencing Technology | MinION; MiSeq | ||
| Genome Coverage | 67 | ||
| Contigs |
|
||
| Total Sequence Length | 2,284,180 (bp) | ||
| GC Percentage | 29.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/990/635/GCA_007990635.1_ASM799063v1 | ||
| CDS | 2196 | ||
| Genes | 2271 | ||
| mRNA | 2271 | ||
| misc RNA | 13 | ||
| rRNA | 15 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.37 % | ||
| CheckM Completeness | 96.3 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM799063v1 |
| GenBank Assembly Accession | GCA_007990635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007990635.1 [NCBI] |
| BioSample | SAMD00174169 [NCBI] |
| BioProject | PRJDB7856 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2019-06-11T01:00:36.123 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 554406 |
| Isolation Source | |
| Geo Location | Japan |
