Genome Meta Information: Oryzomicrobium terrae TPP412 (GCA_008274805.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008274805.1 | ||
| HOMD Taxon-ID | HMT-0028 | ||
| Species Name (in use by HOMD) | Oryzomicrobium terrae | ||
| Organism Name (as deposited) | HMT-028 Oryzomicrobium terrae TPP412 | ||
| Strain or Isolate | TPP412 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Oryzomicrobium; s__Oryzomicrobium terrae |
||
| Sequencing Technology | PacBio; Illumina MiSeq | ||
| Genome Coverage | 861.2 | ||
| Contigs |
|
||
| Total Sequence Length | 3,526,415 (bp) | ||
| GC Percentage | 66.11 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/274/805/GCA_008274805.1_ASM827480v1 | ||
| CDS | 3115 | ||
| Genes | 3198 | ||
| mRNA | 3198 | ||
| misc RNA | 14 | ||
| rRNA | 9 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.02 % | ||
| CheckM Contamination | 0.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM827480v1 |
| GenBank Assembly Accession | GCA_008274805.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008274805.1 [NCBI] |
| BioSample | SAMN06840935 [NCBI] |
| BioProject | PRJNA384495 [NCBI] |
| Submitter | Academia Sinica |
| Submission Date | 2017-04-27T03:14:16.280 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1735038 |
| Isolation Source | |
| Geo Location | Taiwan: Agricultural Experimen |
