Genome Meta Information: Leptotrichia shahii JCM16776 (GCA_008327825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008327825.1 | ||
| HOMD Taxon-ID | HMT-0214 | ||
| Species Name (in use by HOMD) | Leptotrichia shahii | ||
| Organism Name (as deposited) | HMT-214 Leptotrichia shahii JCM16776 | ||
| Strain or Isolate | JCM16776 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia; s__Leptotrichia shahii |
||
| Sequencing Technology | MinION; MiSeq | ||
| Genome Coverage | 67 | ||
| Contigs |
|
||
| Total Sequence Length | 2,161,166 (bp) | ||
| GC Percentage | 29.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/327/825/GCA_008327825.1_ASM832782v1 | ||
| CDS | 1968 | ||
| Genes | 2061 | ||
| mRNA | 2061 | ||
| misc RNA | 32 | ||
| rRNA | 15 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.4 % | ||
| CheckM Contamination | 0.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM832782v1 |
| GenBank Assembly Accession | GCA_008327825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008327825.1 [NCBI] |
| BioSample | SAMD00174168 [NCBI] |
| BioProject | PRJDB7856 [NCBI] |
| Submitter | Division of Bacteriology, Department of Infection and Immunity, School of Medicine, Jichi Medical University |
| Submission Date | 2019-06-11T01:00:36.096 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 157691 |
| Isolation Source | |
| Geo Location | USA |
