Genome Meta Information: Phocaeicola vulgatus VIC01 (GCA_008728395.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008728395.1 | ||
| HOMD Taxon-ID | HMT-0978 | ||
| Species Name (in use by HOMD) | Phocaeicola vulgatus | ||
| Organism Name (as deposited) | HMT-978 Phocaeicola vulgatus VIC01 | ||
| Strain or Isolate | VIC01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola vulgatus |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 185 | ||
| Contigs |
|
||
| Total Sequence Length | 5,010,342 (bp) | ||
| GC Percentage | 42.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/395/GCA_008728395.1_ASM872839v1 | ||
| CDS | 4241 | ||
| Genes | 4363 | ||
| mRNA | 4363 | ||
| misc RNA | 20 | ||
| rRNA | 21 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.17 % | ||
| CheckM Completeness | 97.99 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM872839v1 |
| GenBank Assembly Accession | GCA_008728395.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008728395.1 [NCBI] |
| BioSample | SAMN12645879 [NCBI] |
| BioProject | PRJNA562608 [NCBI] |
| Submitter | Yonsei University College of Medicine |
| Submission Date | 2019-08-28T02:40:04.566 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 821 |
| Isolation Source | |
| Geo Location | South Korea: Seoul |
