Genome Meta Information: Cupriavidus gilardii CCUG 38401 (GCA_008801915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008801915.1 | ||
| HOMD Taxon-ID | HMT-0027 | ||
| Species Name (in use by HOMD) | Cupriavidus gilardii | ||
| Organism Name (as deposited) | HMT-027 Cupriavidus gilardii CCUG 38401 | ||
| Strain or Isolate | CCUG 38401 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus; s__Cupriavidus gilardii |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 314.89 | ||
| Contigs |
|
||
| Total Sequence Length | 5,792,089 (bp) | ||
| GC Percentage | 67.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/801/915/GCA_008801915.1_ASM880191v1 | ||
| CDS | 5166 | ||
| Genes | 5252 | ||
| mRNA | 5252 | ||
| misc RNA | 24 | ||
| rRNA | 3 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 89.63 % | ||
| CheckM Contamination | 3.06 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM880191v1 |
| GenBank Assembly Accession | GCA_008801915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008801915.1 [NCBI] |
| BioSample | SAMN12697570 [NCBI] |
| BioProject | PRJNA563568 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-09-05T05:47:05.573 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VZOV01 |
| NCBI TaxID | 82541 |
| Isolation Source | Whirl pool |
| Geo Location | Missing |
