Genome Meta Information: Campylobacter sputorum CCUG 9728 (GCA_008802035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008802035.1 | ||
| HOMD Taxon-ID | HMT-0776 | ||
| Species Name (in use by HOMD) | Campylobacter sputorum | ||
| Organism Name (as deposited) | HMT-776 Campylobacter sputorum CCUG 9728 | ||
| Strain or Isolate | CCUG 9728 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_F; s__Campylobacter_F sputorum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 189.65 | ||
| Contigs |
|
||
| Total Sequence Length | 1,728,151 (bp) | ||
| GC Percentage | 29.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/802/035/GCA_008802035.1_ASM880203v1 | ||
| CDS | 1747 | ||
| Genes | 1798 | ||
| mRNA | 1798 | ||
| misc RNA | 5 | ||
| rRNA | 2 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 98.54 % | ||
| CheckM Contamination | 0.33 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM880203v1 |
| GenBank Assembly Accession | GCA_008802035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008802035.1 [NCBI] |
| BioSample | SAMN12697565 [NCBI] |
| BioProject | PRJNA563568 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-09-05T05:47:05.493 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VZOQ01 |
| NCBI TaxID | 32024 |
| Isolation Source | oral cavity |
| Geo Location | USA |
