Genome Meta Information: Lactobacillus gasseri ATCC 33323 (GCA_008868295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008868295.1 | ||
| HOMD Taxon-ID | HMT-0615 | ||
| Species Name (in use by HOMD) | Lactobacillus gasseri | ||
| Organism Name (as deposited) | HMT-615 Lactobacillus gasseri ATCC 33323 | ||
| Strain or Isolate | ATCC 33323 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus gasseri |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 122 | ||
| Contigs |
|
||
| Total Sequence Length | 1,824,918 (bp) | ||
| GC Percentage | 35.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/295/GCA_008868295.1_ASM886829v1 | ||
| CDS | 1742 | ||
| Genes | 1832 | ||
| mRNA | 1832 | ||
| misc RNA | 33 | ||
| rRNA | 4 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.15 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM886829v1 |
| GenBank Assembly Accession | GCA_008868295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008868295.1 [NCBI] |
| BioSample | SAMN12822025 [NCBI] |
| BioProject | PRJNA573690 [NCBI] |
| Submitter | Signature Science, LLC |
| Submission Date | 2019-09-23T13:07:04.790 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WBMG01 |
| NCBI TaxID | 324831 |
| Isolation Source | not applicable |
| Geo Location | not applicable |
