Genome Meta Information: Limosilactobacillus vaginalis LV515 (GCA_009362935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009362935.1 | ||
| HOMD Taxon-ID | HMT-0051 | ||
| Species Name (in use by HOMD) | Limosilactobacillus vaginalis | ||
| Organism Name (as deposited) | HMT-051 Limosilactobacillus vaginalis LV515 | ||
| Strain or Isolate | LV515 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus vaginalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 478.96 | ||
| Contigs |
|
||
| Total Sequence Length | 1,894,710 (bp) | ||
| GC Percentage | 40.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/362/935/GCA_009362935.1_ASM936293v1 | ||
| CDS | 1861 | ||
| Genes | 1980 | ||
| mRNA | 1980 | ||
| misc RNA | 41 | ||
| rRNA | 15 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.29 % | ||
| CheckM Contamination | 0.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM936293v1 |
| GenBank Assembly Accession | GCA_009362935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009362935.1 [NCBI] |
| BioSample | SAMN12784813 [NCBI] |
| BioProject | PRJNA566211 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2019-09-19T00:43:05.550 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1633 |
| Isolation Source | vaginal swab from patient with trichomoniasis |
| Geo Location | missing |
