Taxon Table | Genome Table
Genome Meta Information:
Prevotella
copri
iAA615 (GCA_009494375.1)
| HOMD Genome-ID |
GCA_009494375.1
|
| HOMD Taxon-ID |
HMT-0979
|
| Species Name (in use by HOMD) |
Prevotella copri
|
| Organism Name (as deposited) |
HMT-979 Prevotella copri iAA615
|
| Strain or Isolate |
iAA615
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella sp022741625 |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
215
|
| Contigs |
Number of Contigs: 170
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,908,415 (bp) |
| GC Percentage |
45.44
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/494/375/GCA_009494375.1_ASM949437v1
|
| CDS |
3237
|
| Genes |
3313
|
| mRNA |
3313
|
| misc RNA |
17
|
| rRNA |
7
|
| tRNA |
51
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
88.75 %
|
| CheckM Completeness |
98.38 %
|
| CheckM Contamination |
0.25 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM949437v1
|
| GenBank Assembly Accession |
GCA_009494375.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_009494375.1
[NCBI]
|
| BioSample |
SAMN12583301
[NCBI]
|
| BioProject |
PRJNA559898
[NCBI]
|
| Submitter |
New York University
|
| Submission Date |
2019-08-15T12:30:08.413
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
VZCD01
|
| NCBI TaxID |
165179
|
| Isolation Source |
stool from individual AA
|
| Geo Location |
USA: New York
|
