Taxon Table | Genome Table
Genome Meta Information:
Prevotella
copri
iAA917 (GCA_009495335.1)
| HOMD Genome-ID |
GCA_009495335.1
|
| HOMD Taxon-ID |
HMT-0979
|
| Species Name (in use by HOMD) |
Prevotella copri
|
| Organism Name (as deposited) |
HMT-979 Prevotella copri iAA917
|
| Strain or Isolate |
iAA917
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella;
s__Prevotella copri_A |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
53
|
| Contigs |
Number of Contigs: 167
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,905,699 (bp) |
| GC Percentage |
45.46
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/335/GCA_009495335.1_ASM949533v1
|
| CDS |
3227
|
| Genes |
3311
|
| mRNA |
3311
|
| misc RNA |
18
|
| rRNA |
8
|
| tRNA |
57
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
88.77 %
|
| CheckM Completeness |
98.38 %
|
| CheckM Contamination |
0.25 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM949533v1
|
| GenBank Assembly Accession |
GCA_009495335.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_009495335.1
[NCBI]
|
| BioSample |
SAMN12583250
[NCBI]
|
| BioProject |
PRJNA559898
[NCBI]
|
| Submitter |
New York University
|
| Submission Date |
2019-08-15T12:30:07.536
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
VZAH01
|
| NCBI TaxID |
165179
|
| Isolation Source |
stool from individual AA
|
| Geo Location |
USA: New York
|
