Genome Meta Information: Lentilactobacillus buchneri LA1184 (GCA_009495465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009495465.1 | ||
| HOMD Taxon-ID | HMT-0881 | ||
| Species Name (in use by HOMD) | Lentilactobacillus buchneri | ||
| Organism Name (as deposited) | HMT-881 Lentilactobacillus buchneri LA1184 | ||
| Strain or Isolate | LA1184 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus; s__Lentilactobacillus buchneri |
||
| Sequencing Technology | Illumina HiSeq and PacBio | ||
| Genome Coverage | 500 | ||
| Contigs |
|
||
| Total Sequence Length | 2,761,436 (bp) | ||
| GC Percentage | 44.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/495/465/GCA_009495465.1_ASM949546v1 | ||
| CDS | 2684 | ||
| Genes | 2811 | ||
| mRNA | 2811 | ||
| misc RNA | 47 | ||
| rRNA | 15 | ||
| tRNA | 64 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.66 % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM949546v1 |
| GenBank Assembly Accession | GCA_009495465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009495465.1 [NCBI] |
| BioSample | SAMN12018361 [NCBI] |
| BioProject | PRJNA548312 [NCBI] |
| Submitter | North Carolina State University |
| Submission Date | 2019-06-11T10:58:03.520 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VFBP01 |
| NCBI TaxID | 1581 |
| Isolation Source | Reduced NaCl fermented cucumber spoilage |
| Geo Location | USA: Raleigh, NC |
