Genome Meta Information: Staphylococcus capitis APC2923 (GCA_009663495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009663495.1 | ||
| HOMD Taxon-ID | HMT-0116 | ||
| Species Name (in use by HOMD) | Staphylococcus capitis | ||
| Organism Name (as deposited) | HMT-116 Staphylococcus capitis APC2923 | ||
| Strain or Isolate | APC2923 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus capitis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 25 | ||
| Contigs |
|
||
| Total Sequence Length | 2,552,268 (bp) | ||
| GC Percentage | 32.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/663/495/GCA_009663495.1_ASM966349v1 | ||
| CDS | 2453 | ||
| Genes | 2572 | ||
| mRNA | 2572 | ||
| misc RNA | 51 | ||
| rRNA | 8 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.81 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM966349v1 |
| GenBank Assembly Accession | GCA_009663495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009663495.1 [NCBI] |
| BioSample | SAMN13058796 [NCBI] |
| BioProject | PRJNA578371 [NCBI] |
| Submitter | APC Microbiome Ireland |
| Submission Date | 2019-10-18T12:11:09.450 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | WHVU01 |
| NCBI TaxID | 29388 |
| Isolation Source | toe web-space skin |
| Geo Location | Ireland: Cork |
