Genome Meta Information: Prevotella vespertina A2879 (GCA_009728485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009728485.1 | ||
| HOMD Taxon-ID | HMT-0306 | ||
| Species Name (in use by HOMD) | Prevotella vespertina | ||
| Organism Name (as deposited) | HMT-306 Prevotella vespertina A2879 | ||
| Strain or Isolate | A2879 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella vespertina |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 274 | ||
| Contigs |
|
||
| Total Sequence Length | 2,818,117 (bp) | ||
| GC Percentage | 41.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/728/485/GCA_009728485.1_ASM972848v1 | ||
| CDS | 2338 | ||
| Genes | 2404 | ||
| mRNA | 2404 | ||
| misc RNA | 9 | ||
| rRNA | 5 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM972848v1 |
| GenBank Assembly Accession | GCA_009728485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009728485.1 [NCBI] |
| BioSample | SAMN12699032 [NCBI] |
| BioProject | PRJNA564064 [NCBI] |
| Submitter | Tuebingen University Hospital |
| Submission Date | 2019-09-05T10:15:03.670 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VVIQ01 |
| NCBI TaxID | 2608404 |
| Isolation Source | abscess swab |
| Geo Location | Germany |
