Genome Meta Information: Listeria monocytogenes N843_15 (GCA_009730635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009730635.1 | ||
| HOMD Taxon-ID | HMT-0825 | ||
| Species Name (in use by HOMD) | Listeria monocytogenes | ||
| Organism Name (as deposited) | HMT-825 Listeria monocytogenes N843_15 | ||
| Strain or Isolate | N843_15 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Listeriaceae;g__Listeria; s__Listeria monocytogenes |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 177 | ||
| Contigs |
|
||
| Total Sequence Length | 2,896,666 (bp) | ||
| GC Percentage | 37.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/635/GCA_009730635.1_ASM973063v1 | ||
| CDS | 2802 | ||
| Genes | 2989 | ||
| mRNA | 2989 | ||
| misc RNA | 100 | ||
| rRNA | 18 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.96 % | ||
| CheckM Completeness | 98.53 % | ||
| CheckM Contamination | 0.35 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM973063v1 |
| GenBank Assembly Accession | GCA_009730635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009730635.1 [NCBI] |
| BioSample | SAMN13341946 [NCBI] |
| BioProject | PRJNA590892 [NCBI] |
| Submitter | University of Zurich, Vetsuisse Faculty |
| Submission Date | 2019-11-21T09:37:03.666 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1639 |
| Isolation Source | septic hip prosthetic joint fluid |
| Geo Location | Switzerland: Zurich |
