Genome Meta Information: Mesorhizobium japonicum R7A (GCA_009761735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009761735.1 | ||
| HOMD Taxon-ID | HMT-0659 | ||
| Species Name (in use by HOMD) | Mesorhizobium japonicum | ||
| Organism Name (as deposited) | HMT-659 Mesorhizobium japonicum R7A | ||
| Strain or Isolate | R7A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium; s__Mesorhizobium japonicum |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 6,529,994 (bp) | ||
| GC Percentage | 62.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/761/735/GCA_009761735.1_ASM976173v1 | ||
| CDS | 6230 | ||
| Genes | 6295 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 6 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.63 % | ||
| CheckM Completeness | 99.74 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM976173v1 |
| GenBank Assembly Accession | GCA_009761735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009761735.1 [NCBI] |
| BioSample | SAMN02597167 [NCBI] |
| BioProject | PRJNA496338 [NCBI] |
| Submitter | University of Otago |
| Submission Date | 2014-01-27T12:23:41.220 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 935547 |
| Isolation Source | |
| Geo Location | New Zealand |
