Taxon Table | Genome Table
Genome Meta Information:
Novosphingobium
panipatense
TCA1 (GCA_009811895.1)
| HOMD Genome-ID |
GCA_009811895.1
|
| HOMD Taxon-ID |
HMT-0342
|
| Species Name (in use by HOMD) |
Novosphingobium panipatense
|
| Organism Name (as deposited) |
HMT-342 Novosphingobium panipatense TCA1
|
| Strain or Isolate |
TCA1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium;
s__Novosphingobium panipatense_A |
| Sequencing Technology |
Hiseq2500
|
| Genome Coverage |
184.4
|
| Contigs |
Number of Contigs: 136
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
6,173,804 (bp) |
| GC Percentage |
64.28
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/811/895/GCA_009811895.1_ASM981189v1
|
| CDS |
5602
|
| Genes |
5691
|
| mRNA |
5691
|
| misc RNA |
31
|
| rRNA |
3
|
| tRNA |
54
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
97.64 %
|
| CheckM Contamination |
10.88 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM981189v1
|
| GenBank Assembly Accession |
GCA_009811895.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_009811895.1
[NCBI]
|
| BioSample |
SAMD00197004
[NCBI]
|
| BioProject |
PRJDB9061
[NCBI]
|
| Submitter |
Laboratory of Life Sciences for Extremophiles, Life Sciences, Toyo University
|
| Submission Date |
2019-12-10T01:01:30.543
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
BLJH01
|
| NCBI TaxID |
2682474
|
| Isolation Source |
|
| Geo Location |
not applicable
|
