Genome Meta Information: Lactobacillus iners Indica1 (GCA_009857205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009857205.1 | ||
| HOMD Taxon-ID | HMT-0838 | ||
| Species Name (in use by HOMD) | Lactobacillus iners | ||
| Organism Name (as deposited) | HMT-838 Lactobacillus iners Indica1 | ||
| Strain or Isolate | Indica1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus iners |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 1,331,119 (bp) | ||
| GC Percentage | 33.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/857/205/GCA_009857205.1_ASM985720v1 | ||
| CDS | 1241 | ||
| Genes | 1357 | ||
| mRNA | 1357 | ||
| misc RNA | 27 | ||
| rRNA | 18 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.81 % | ||
| CheckM Completeness | 99.61 % | ||
| CheckM Contamination | 1.2 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM985720v1 |
| GenBank Assembly Accession | GCA_009857205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009857205.1 [NCBI] |
| BioSample | SAMN13738159 [NCBI] |
| BioProject | PRJNA599052 [NCBI] |
| Submitter | Translational Health Science and Technology Institute |
| Submission Date | 2020-01-06T02:44:03.640 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WWFC01 |
| NCBI TaxID | 147802 |
| Isolation Source | high vaginal swabs |
| Geo Location | India |
