Genome Meta Information: Staphylococcus aureus UP_1539 (GCA_009912295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009912295.1 | ||
| HOMD Taxon-ID | HMT-0550 | ||
| Species Name (in use by HOMD) | Staphylococcus aureus | ||
| Organism Name (as deposited) | HMT-550 Staphylococcus aureus UP_1539 | ||
| Strain or Isolate | UP_1539 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus aureus |
||
| Sequencing Technology | Illumina MiSeq / Oxford Nanopore MiniION | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 2,746,804 (bp) | ||
| GC Percentage | 32.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/912/295/GCA_009912295.1_ASM991229v1 | ||
| CDS | 2508 | ||
| Genes | 2704 | ||
| mRNA | 2704 | ||
| misc RNA | 117 | ||
| rRNA | 16 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.11 % | ||
| CheckM Completeness | 98.25 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM991229v1 |
| GenBank Assembly Accession | GCA_009912295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009912295.1 [NCBI] |
| BioSample | SAMN11175639 [NCBI] |
| BioProject | PRJNA528186 [NCBI] |
| Submitter | University Hospital Duesseldorf |
| Submission Date | 2019-03-20T07:47:06.570 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1280 |
| Isolation Source | missing |
| Geo Location | missing |
