Genome Meta Information: Lactobacillus johnsonii G2A (GCA_010586925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_010586925.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii G2A | ||
| Strain or Isolate | G2A | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus sp910589675 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 690 | ||
| Contigs |
|
||
| Total Sequence Length | 2,177,933 (bp) | ||
| GC Percentage | 34.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/586/925/GCA_010586925.1_ASM1058692v1 | ||
| CDS | 2045 | ||
| Genes | 2253 | ||
| mRNA | 2253 | ||
| misc RNA | 69 | ||
| rRNA | 30 | ||
| tRNA | 108 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.6 % | ||
| CheckM Completeness | 93.01 % | ||
| CheckM Contamination | 4.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1058692v1 |
| GenBank Assembly Accession | GCA_010586925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_010586925.1 [NCBI] |
| BioSample | SAMN11618738 [NCBI] |
| BioProject | PRJNA542320 [NCBI] |
| Submitter | University of Alabama at Birmingham |
| Submission Date | 2019-05-10T10:31:06.790 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33959 |
| Isolation Source | |
| Geo Location | USA |
