Genome Meta Information: Lactobacillus iners KY (GCA_010748955.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_010748955.1 | ||
| HOMD Taxon-ID | HMT-0838 | ||
| Species Name (in use by HOMD) | Lactobacillus iners | ||
| Organism Name (as deposited) | HMT-838 Lactobacillus iners KY | ||
| Strain or Isolate | KY | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus iners |
||
| Sequencing Technology | Oxford Nanopore Flongle | ||
| Genome Coverage | 165.87 | ||
| Contigs |
|
||
| Total Sequence Length | 1,339,101 (bp) | ||
| GC Percentage | 33.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/748/955/GCA_010748955.1_ASM1074895v1 | ||
| CDS | 1352 | ||
| Genes | 1463 | ||
| mRNA | 1463 | ||
| misc RNA | 22 | ||
| rRNA | 18 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.79 % | ||
| CheckM Completeness | 80.99 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1074895v1 |
| GenBank Assembly Accession | GCA_010748955.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_010748955.1 [NCBI] |
| BioSample | SAMN13943229 [NCBI] |
| BioProject | PRJNA603871 [NCBI] |
| Submitter | Seoul National Univerisity |
| Submission Date | 2020-01-30T01:20:10.899 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 147802 |
| Isolation Source | |
| Geo Location | South Korea:Daejeon |
