Genome Meta Information: Lactobacillus iners C0254C1 (GCA_011058795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011058795.1 | ||
| HOMD Taxon-ID | HMT-0838 | ||
| Species Name (in use by HOMD) | Lactobacillus iners | ||
| Organism Name (as deposited) | HMT-838 Lactobacillus iners C0254C1 | ||
| Strain or Isolate | C0254C1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus iners |
||
| Sequencing Technology | PacBio Sequel II | ||
| Genome Coverage | 2000 | ||
| Contigs |
|
||
| Total Sequence Length | 1,314,822 (bp) | ||
| GC Percentage | 33.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/058/795/GCA_011058795.1_ASM1105879v1 | ||
| CDS | 1230 | ||
| Genes | 1341 | ||
| mRNA | 1341 | ||
| misc RNA | 25 | ||
| rRNA | 15 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.97 % | ||
| CheckM Completeness | 98.01 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1105879v1 |
| GenBank Assembly Accession | GCA_011058795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011058795.1 [NCBI] |
| BioSample | SAMN14165693 [NCBI] |
| BioProject | PRJNA608123 [NCBI] |
| Submitter | University of Maryland Baltimore |
| Submission Date | 2020-02-22T14:40:06.150 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 147802 |
| Isolation Source | Mid-vagina |
| Geo Location | USA: Baltimore |
